Enzotools Collective

Missed an error message in the "yt load" command

Missed changing the entry point for yt.commands -> yt.command_line. Fixing some docstrings.

* Updating cmdln.py to the newest version * Renaming 'commands.py' to 'command_line.py' to avoid conflicts. * Added 'yt load' command to load up a parameter file and end up in an IPython shell.

Adding some imports to yt.mods

Changing default colormap to algae (I thought I did this a couple days ago...) and adding RadialVelocityKMSABS.

corrected display names of scaled versions of radius fields (Radiuspc, Radiusau, and so on) so they all say radius

Adding a check to the progressbar to make the maxval == 1 if it's 0. This should eliminate a bunch of problems, but also hide some others. The secret is that if you are relying on the progressbar to report an empty iterable, bad idea!

Replacing min/max with min_val/max_val

Bug with PY_DIR vs DEST_DIR

Adding MPL 0.98.x compat

Fixing a bug with the 1D datasets

Adding an alias for bds_highcontrast as "algae" and making it the default. This is a colormap designed by Britton Smith.

Added a few more conversion factors

forgot to add the save_to_pdf bit to PlotTypes? for new save_book.

ported new save_book from trunk to yt-1.6. this uses matplotlib's native PdfPages?, removing PyPdf? dependency

Modified the halo RMS velocity to weight particles by mass.

Adding option to specify x_vec and y_vec

Added a few more conversion factors

Changed unit conversion pattern to A_per_B

By request, adding a RMS velocity calculation to the halo finding module. It works for all kinds of halos, and in particular, in parallel with parallelHF halos.

Adding physical constants module. Currently only clones things already used in yt.

If we only store the slice information -- i.e., min/max indices along all three axes -- then we save on the memory utilized during a volume rendering. We can and should store the original pointers to the grid data, but we do not necessarily need to store the subsections.

Removed need for PyTools. Changed tabs to spaces

Return no halos if there the halo file is empty.

Fixed issue of inconsistency between InitialTime for simulation and
InitialTime used to calculate data dumps.

Adding comoving fields.

Merged.

Now we read in DataDumpNumber so the data dump
indices are calculated correctly from restarts.

gc.collect() should be called more often, as it helps with the halo finder.

Initial import of slow but fully-determined tree generator for contours

This should fix the bug reported by Luigi Iapichino wherein a phase plot added with a specified cmap= argument was not updating the colorbar.

Adding a "--detailed" argument, to get detailed tracebacks via the cgitb module. A future enhancement will allow for logging and pasting of these. (more info:  http://blog.doughellmann.com/2010/01/pymotw-cgitb-detailed-traceback-reports.html )

Adding the configure step for h5py (Thanks, John & Britton!)

adding 10.6

(diff)

Initial import of the OSX 10.6 installation script

Fixed some issues with the transfer function editor widget -- made the range editors have better formatting, made the aspect ratio for the volume rendered image fixed at 1.0.

ensure background is transparent before saving to pdf

fixed:

Added in r1630.

Updating the save_book method to use matplotlib and to allow metadata to be saved.

Removing extraneous print statement

Adding sample_colormap and add_layers to the ColorTransferFunction? object

Making the HDF4 notice a debug statement rather than an info statement.

fixed orion serialization in 1.6

added storage_filename parameter to OrionStaticOutputs?. this fixes the serialization issue.

Updating documentation build

adding community installation page

(diff)

Adding Steele to the install script notice

Tagging yt-1.6.1, an update to the 1.6 series including:

Bug fixes:

• Critical fixes to ParticleIO
• Halo mass function fixes for comoving coordinates
• Fixes to halo finding
• Fixes to the installation script

Improvements:

• "yt instinfo" command to report current installation information as well as auto-update some types of installations
• Optimizations to the volume renderer (2x-26x reported speedups)

Importing r1588 of branches/yt-1.6 as yt-1.6 -- forgetting to tag this was a mistake!

Fixed a bug with vertical colorbars in raven

Re-cython'd

Bug fixes from trunk and instinfo command.

Re-generated the cython files

Backporting from hg: new "instinfo" command, vast improvements and speedups to the volume renderer, bug fix for longdouble on some arches.

Minor cosmetic changes to install script

fixed:

Moved in r1614 to using pip and distribute.

fixed:

Trunk moved in r1614.

wontfix:

The new contouring mechanism changes this quite a bit, as the contouring is done grid-by-grid with joins. Additionally, the stack overflow problem is fixed. I am going to make this a 'wontfix' for now.

Something about the threading model in IPython 0.10 doesn't work with the current iyt instantiation.

Moving to distribute from setuptools.